PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 516aa    MW: 56903 Da    PI: 8.2877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0596118123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Tp3g12040  96 FVCEICNKGFQRDQNLQLHRRGH 118
                89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.26E-695118No hitNo description
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121718.3E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355240138168IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.26E-6168193No hitNo description
SMARTSM00355170173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MMNKDMLLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEA SGSNYFPHHQ QQEEQQQFFV  60
PDSQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPLQQNQ  240
NNQPNPLLIH HPSPPPHHHQ AQPNMNVSSS SSSSHDIINS LHFQTNNNGT VNSNTSSNNL  300
HTFPMKKEEQ QSNDHIISYH QHSIPPWLAP QPQDLTSSNP NPSNGGRGGG LFSLAASPAM  360
SATALLQKAA QMGSTKTPPL PPTTDFERSA HHNNLTTTMA AMMTSPSGFN SSNNNNNQAL  420
FQDYSASGFD HHGGQEPFDD TFGGFLRTNV DTTTASTAGT DKNKSGGGGG VGEGLTRDFL  480
GLRPLMSHNE ILSFAGLGNC INGSASDQLH PKPWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407162.10.0hypothetical protein EUTSA_v10020544mg
RefseqXP_006407163.10.0hypothetical protein EUTSA_v10020544mg
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11